HL_4DV2_021

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAA(M2G)(5MC)AACGC

Length

10 nucleotides

Bulged bases

4DV2|1|A|A|968, 4DV2|1|A|G|971

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV2_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1486

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4DV2|1|A|G|963
4DV2|1|A|A|964
4DV2|1|A|A|965
4DV2|1|A|M2G|966
4DV2|1|A|5MC|967
4DV2|1|A|A|968
4DV2|1|A|A|969
4DV2|1|A|C|970
4DV2|1|A|G|971
4DV2|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain M

ribosomal protein S13