3D structure

PDB id
4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
GUUCGGC
Length
7 nucleotides
Bulged bases
4DV2|1|A|U|1136, 4DV2|1|A|G|1139
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DV2_026 not in the Motif Atlas
Homologous match to HL_4LFB_026
Geometric discrepancy: 0.3216
The information below is about HL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87954.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

4DV2|1|A|G|1134
4DV2|1|A|U|1135
4DV2|1|A|U|1136
4DV2|1|A|C|1137
4DV2|1|A|G|1138
4DV2|1|A|G|1139
4DV2|1|A|C|1140

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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