HL_4E8R_004

3D structure

PDB id

4E8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGAACAC

Length

7 nucleotides

Bulged bases

4E8R|1|A|A|137, 4E8R|1|A|A|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8R_004 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.1601

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4E8R|1|A|G|135
4E8R|1|A|G|136
4E8R|1|A|A|137
4E8R|1|A|A|138
4E8R|1|A|C|139
4E8R|1|A|A|140
4E8R|1|A|C|141

Current chains

Chain A

Group IIC intron

Nearby chains