HL_4E8T_008

3D structure

PDB id

4E8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

4E8T|1|A|U|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8T_008 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.1889

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4E8T|1|A|G|338
4E8T|1|A|U|339
4E8T|1|A|U|340
4E8T|1|A|C|341
4E8T|1|A|G|342
4E8T|1|A|C|343

Current chains

Chain A

Group IIC intron

Nearby chains