HL_4ERJ_003

3D structure

PDB id

4ERJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAUAC

Length

7 nucleotides

Bulged bases

4ERJ|1|A|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ERJ_003 not in the Motif Atlas

Homologous match to HL_4ERL_003

Geometric discrepancy: 0.0538

The information below is about HL_4ERL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ERJ|1|A|G|121
4ERJ|1|A|G|122
4ERJ|1|A|A|123
4ERJ|1|A|A|124
4ERJ|1|A|U|125
4ERJ|1|A|A|126
4ERJ|1|A|C|127

Current chains

Chain A

Lysine riboswitch RNA

Nearby chains