HL_4ERL_003

3D structure

PDB id

4ERL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAUAC

Length

7 nucleotides

Bulged bases

4ERL|1|A|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ERL_003 not in the Motif Atlas

Homologous match to HL_3D0U_003

Geometric discrepancy: 0.1114

The information below is about HL_3D0U_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

4ERL|1|A|G|121
4ERL|1|A|G|122
4ERL|1|A|A|123
4ERL|1|A|A|124
4ERL|1|A|U|125
4ERL|1|A|A|126
4ERL|1|A|C|127

Current chains

Chain A

Lysine riboswitch RNA

Nearby chains