HL_4FAW_005

3D structure

PDB id

4FAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

4FAW|1|A|G|179, 4FAW|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_17537.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4FAW|1|A|U|178
4FAW|1|A|G|179
4FAW|1|A|C|180
4FAW|1|A|A|181
4FAW|1|A|U|182
4FAW|1|A|A|183
4FAW|1|A|A|184
4FAW|1|A|C|185
4FAW|1|A|A|186
4FAW|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'