4FAW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4FAW_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge | geometric HL_3IGI_002 HL_73183.1 | |
| HL_4FAW_005 | 1/A/178:187 | No text annotation | homologous HL_5J02_005 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4FAW_001 | T-loop with 2 stacked bulged bases | ||
| HL_4FAW_003 | No text annotation | ||
| HL_4FAW_004 | No text annotation | ||
| HL_4FAW_006 | GNRA | ||
| HL_4FAW_007 | No text annotation | ||
| HL_4FAW_010 | No text annotation | ||
| HL_4FAW_008 | UNCG | ||
| HL_4FAW_009 | Other HL |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4FAW_001 | 1/A/10:14, 1/A/257:262 | No text annotation | geometric IL_3IGI_001 IL_99498.1 | |
| IL_4FAW_002 | 1/A/70:74, 1/A/113:117 | No text annotation | homologous IL_5J02_002 NA | |
| IL_4FAW_003 | 1/A/76:79, 1/A/103:111 | No text annotation | homologous IL_5J02_003 NA | |
| IL_4FAW_004 | 1/A/82:84, 1/A/99:100 | Single bulged G | geometric IL_3IGI_004 IL_00225.13 | |
| IL_4FAW_005 | 1/A/128:129, 1/A/234:238 | No text annotation | homologous IL_5J02_004 NA | |
| IL_4FAW_018 | 1/A/158:161, 1/A/216:219 | No text annotation | ||
| IL_4FAW_009 | 1/A/168:169, 1/A/197:209 | No text annotation | homologous IL_5J02_007 NA | |
| IL_4FAW_010 | 1/A/172:175, 1/A/190:194 | No text annotation | homologous IL_5J02_008 NA | |
| IL_4FAW_016 | 1/A/296:298, 1/A/320:321 | No text annotation | ||
| IL_4FAW_017 | 1/A/298:303, 1/A/316:320 | No text annotation | ||
| IL_4FAW_014 | 1/A/365:366, 1/A/375:378 | Multiple bulged bases | geometric IL_3IGI_013 IL_42626.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4FAW_006 | No text annotation | ||
| IL_4FAW_007 | No text annotation | ||
| IL_4FAW_015 | No text annotation | ||
| IL_4FAW_008 | Isolated non-canonical cWW pair | ||
| IL_4FAW_011 | No text annotation | ||
| IL_4FAW_012 | 8x6 Sarcin-Ricin with inserted A; G-bulge | ||
| IL_4FAW_013 | Receptor of 11-nt loop-receptor motif |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4FAW_001 | 1/A/133:135, 1/A/141:145, 1/A/229:230 | No text annotation | ||
| J5_4FAW_001 | 1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247 | No text annotation |
Problematic loops
No problematic loops
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