HL_4FEJ_001

3D structure

PDB id

4FEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine

Experimental method

X-RAY DIFFRACTION

Resolution

1.5 Å

Loop

Sequence

GGAUAUGGC

Length

9 nucleotides

Bulged bases

4FEJ|1|B|U|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FEJ_001 not in the Motif Atlas

Geometric match to HL_4FEN_001

Geometric discrepancy: 0.0238

The information below is about HL_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4FEJ|1|B|G|31
4FEJ|1|B|G|32
4FEJ|1|B|A|33
4FEJ|1|B|U|34
4FEJ|1|B|A|35
4FEJ|1|B|U|36
4FEJ|1|B|G|37
4FEJ|1|B|G|38
4FEJ|1|B|C|39

Current chains

Chain B

A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain

Nearby chains