Motif HL_59138.2 Version HL_59138.2 of this group appears in releases 4.4 to 4.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	1-8	4-5	4-6
1	HL_6DB8_003	6DB8	0.6193	2	R	RNA (60-MER)	G	36	G	37	U	38	G	39	A	41	U	42	G	43	C	45	cWW	cSs
2	HL_9LKF_001	9LKF	0.1840	1	A	Purine riboswitch	U	18	A	19	A	20	U	21	U	22	G	24	G	25	A	26	cWW
3	HL_9LKE_001	9LKE	0.1398	1	A	Purine riboswitch	U	18	A	19	A	20	U	21	U	22	G	24	G	25	A	26	cWW
4	HL_9V4U_001	9V4U	0.1131	1	A	Purine riboswitch	U	18	A	19	A	20	U	21	U	22	G	24	G	25	A	26	cWW		ncSs
5	HL_6P2H_001	6P2H	0.1295	1	A	Purine riboswitch	A	31	A	32	A	33	U	34	A	35	G	37	G	38	U	39	cWW		ncSs
6	HL_4FEN_001	4FEN	0.1591	1	B	Purine riboswitch	G	31	G	32	A	33	U	34	A	35	G	37	G	38	C	39	cWW		ncSs
7	HL_1Y27_001	1Y27	0.1052	1	X	Purine riboswitch	G	31	G	32	A	33	U	34	A	35	G	37	G	38	C	39	cWW		ncSs
8	HL_5KPY_001	5KPY	0.0000	1	A	5-hydroxytryptophan RNA aptamer	G	31	G	32	A	33	U	34	A	35	G	37	G	38	C	39	cWW		ncSs
9	HL_3RKF_007	3RKF	0.1256	1	C	Purine riboswitch	G	31	G	32	A	33	U	34	A	35	A	37	G	38	C	39	cWW
10	HL_3SKL_004	3SKL	0.7603	1	B	2dG-I riboswitch aptamer	C	38	A	39	U	40	A	41	A	42	G	44	G	45	G	46	cWW
11	HL_3SKI_001	3SKI	0.7722	1	A	2dG-I riboswitch aptamer	C	39	A	40	U	41	A	42	A	43	G	45	G	46	G	47	cWW		ncsS

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAUUUGGA	3
GGAUAUGGC	3
CAUAAUGGG	2
GGUGAAUGAC	1
AAAUAUGGU	1
GGAUAUAGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAUUUGG	3
GAUAUGG	3
AUAAUGG	2
GUGAAUGA	1
AAUAUGG	1
GAUAUAG	1

Release history

Release	4.4	4.5	4.6
Date	2025-12-03	2025-12-31	2026-01-28
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-F-F-F-F-F-F
Heat map statistics: Min 0.09 | Avg 0.40 | Max 0.98

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Coloring options: Nucleotide numbers

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