HL_4FRN_005
3D structure
- PDB id
- 4FRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the cobalamin riboswitch regulatory element
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.43 Å
Loop
- Sequence
- GUGUAAUUC
- Length
- 9 nucleotides
- Bulged bases
- 4FRN|1|B|U|34, 4FRN|1|B|U|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 bulged bases not stacked
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
4FRN|1|B|G|28
4FRN|1|B|U|29
4FRN|1|B|G|30
4FRN|1|B|U|31
4FRN|1|B|A|32
4FRN|1|B|A|33
4FRN|1|B|U|34
4FRN|1|B|U|35
4FRN|1|B|C|36
Current chains
- Chain B
- Cobalamin riboswitch aptamer domain
Nearby chains
- Chain A
- Cobalamin riboswitch aptamer domain
Coloring options: