4FRN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4FRN_001 | 1/A/28:36 | T-loop with 2 bulged bases not stacked | geometric HL_4FRN_005 NA | |
| HL_4FRN_002 | 1/A/44:51 | Pseudoknot geometry | geometric HL_4FRN_006 NA | |
| HL_4FRN_003 | 1/A/56:64 | T-loop with unstacked turn | geometric HL_4FRN_007 NA | |
| HL_4FRN_004 | 1/A/90:99 | No text annotation | geometric HL_4FRN_008 NA | |
| HL_4FRN_005 | 1/B/28:36 | T-loop with 2 bulged bases not stacked | ||
| HL_4FRN_006 | 1/B/44:51 | Pseudoknot geometry | ||
| HL_4FRN_007 | 1/B/56:64 | T-loop with unstacked turn | ||
| HL_4FRN_008 | 1/B/90:99 | Externally structured | geometric HL_8C3A_022 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4FRN_001 | 1/A/6:14, 1/A/75:76 | No text annotation | geometric IL_4FRN_003 NA | |
| IL_4FRN_002 | 1/A/23:25, 1/A/39:40 | Single bulged U | geometric IL_4V9F_074 IL_97561.2 | |
| IL_4FRN_003 | 1/B/6:14, 1/B/75:76 | No text annotation | geometric IL_4M4O_003 IL_19897.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4FRN_004 | Single bulged U |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_4FRN_001 | 1/A/18:23, 1/A/40:43, 1/A/52:54, 1/A/66:71 | Cobalamin riboswitch junction | homologous J4_4FRN_002 NA | |
| J4_4FRN_002 | 1/B/18:23, 1/B/40:43, 1/B/52:54, 1/B/66:71 | Cobalamin riboswitch junction |
Problematic loops
No problematic loops
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