HL_4FY3_005

3D structure

PDB id

4FY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Crystallographic Structure of Panicum Mosaic Virus

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUUUU

Length

6 nucleotides

Bulged bases

4FY3|1|X|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FY3_005 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2141

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4FY3|1|X|A|6
4FY3|1|X|U|7
4FY3|1|X|U|8
4FY3|1|X|U|9
4FY3|1|X|U|10
4FY3|1|X|U|11

Current chains

Chain X

5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'

Nearby chains

Chain U

Capsid protein

Chain V

Capsid protein

Chain W

Capsid protein