HL_4GKK_006

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4GKK|1|A|G|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4GKK_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.048

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4GKK|1|A|G|254
4GKK|1|A|G|255
4GKK|1|A|U|256
4GKK|1|A|A|257
4GKK|1|A|A|258
4GKK|1|A|U|259
4GKK|1|A|G|260
4GKK|1|A|G|261
4GKK|1|A|C|262

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20