HL_4IO9_013

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4IO9|1|X|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1399

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4IO9|1|X|G|423
4IO9|1|X|G|424
4IO9|1|X|A|425
4IO9|1|X|C|426
4IO9|1|X|C|427
4IO9|1|X|A|428
4IO9|1|X|C|429
4IO9|1|X|C|430

Current chains

Chain X

23S ribosomal RNA

Nearby chains