HL_4IO9_022

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

4IO9|1|X|U|760, 4IO9|1|X|A|764, 4IO9|1|X|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_022 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1277

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

4IO9|1|X|U|757
4IO9|1|X|G|758
4IO9|1|X|C|759
4IO9|1|X|U|760
4IO9|1|X|G|761
4IO9|1|X|A|762
4IO9|1|X|A|763
4IO9|1|X|A|764
4IO9|1|X|C|765
4IO9|1|X|A|766

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32