HL_4IO9_023

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4IO9|1|X|A|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1013

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4IO9|1|X|U|792
4IO9|1|X|G|793
4IO9|1|X|A|794
4IO9|1|X|A|795
4IO9|1|X|A|796
4IO9|1|X|A|797
4IO9|1|X|G|798

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2