HL_4IO9_029

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_029 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2743

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4IO9|1|X|C|1185
4IO9|1|X|G|1186
4IO9|1|X|A|1187
4IO9|1|X|A|1188
4IO9|1|X|G|1189

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15