HL_4IO9_032

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4IO9|1|X|G|1338, 4IO9|1|X|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_032 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.077

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4IO9|1|X|G|1337
4IO9|1|X|G|1338
4IO9|1|X|U|1339
4IO9|1|X|C|1340
4IO9|1|X|G|1341
4IO9|1|X|U|1342
4IO9|1|X|C|1343

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22