HL_4IO9_034

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

4IO9|1|X|U|1409, 4IO9|1|X|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_034 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.1039

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4IO9|1|X|G|1402
4IO9|1|X|U|1403
4IO9|1|X|C|1404
4IO9|1|X|A|1405
4IO9|1|X|A|1406
4IO9|1|X|G|1407
4IO9|1|X|A|1408
4IO9|1|X|U|1409
4IO9|1|X|U|1410
4IO9|1|X|C|1411

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23