HL_4IO9_037

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

4IO9|1|X|U|1551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_037 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1567

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4IO9|1|X|C|1549
4IO9|1|X|C|1550
4IO9|1|X|U|1551
4IO9|1|X|C|1552
4IO9|1|X|G|1553
4IO9|1|X|G|1554

Current chains

Chain X

23S ribosomal RNA

Nearby chains