HL_4IO9_040

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

4IO9|1|X|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_040 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.2143

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

4IO9|1|X|U|1647
4IO9|1|X|C|1648
4IO9|1|X|A|1649
4IO9|1|X|A|1650
4IO9|1|X|U|1651
4IO9|1|X|G|1652

Current chains

Chain X

23S ribosomal RNA

Nearby chains