HL_4IO9_052

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

4IO9|1|X|A|2247, 4IO9|1|X|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0712

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4IO9|1|X|C|2243
4IO9|1|X|C|2244
4IO9|1|X|A|2245
4IO9|1|X|A|2246
4IO9|1|X|A|2247
4IO9|1|X|A|2248
4IO9|1|X|U|2249
4IO9|1|X|G|2250
4IO9|1|X|U|2251
4IO9|1|X|A|2252
4IO9|1|X|A|2253
4IO9|1|X|C|2254
4IO9|1|X|G|2255

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27