HL_4IO9_053
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUGGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IO9_053 not in the Motif Atlas
- Homologous match to HL_7A0S_054
- Geometric discrepancy: 0.594
- The information below is about HL_7A0S_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4IO9|1|X|G|2282
4IO9|1|X|G|2283
4IO9|1|X|U|2284
4IO9|1|X|U|2285
4IO9|1|X|G|2286
4IO9|1|X|G|2287
4IO9|1|X|A|2288
4IO9|1|X|A|2289
4IO9|1|X|A|2290
4IO9|1|X|U|2291
4IO9|1|X|C|2292
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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