HL_4IO9_054

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_054 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1256

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4IO9|1|X|C|2303
4IO9|1|X|G|2304
4IO9|1|X|C|2305
4IO9|1|X|A|2306
4IO9|1|X|A|2307
4IO9|1|X|A|2308
4IO9|1|X|G|2309
4IO9|1|X|G|2310

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27