HL_4IO9_055

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGACACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_055 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.1278

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4IO9|1|X|C|2334
4IO9|1|X|U|2335
4IO9|1|X|G|2336
4IO9|1|X|A|2337
4IO9|1|X|C|2338
4IO9|1|X|A|2339
4IO9|1|X|C|2340
4IO9|1|X|G|2341

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27