HL_4IO9_057
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUGUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 4IO9|1|X|U|2385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IO9_057 not in the Motif Atlas
- Homologous match to HL_7A0S_058
- Geometric discrepancy: 0.1336
- The information below is about HL_7A0S_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51853.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4IO9|1|X|C|2383
4IO9|1|X|G|2384
4IO9|1|X|U|2385
4IO9|1|X|G|2386
4IO9|1|X|U|2387
4IO9|1|X|G|2388
4IO9|1|X|G|2389
4IO9|1|X|A|2390
4IO9|1|X|A|2391
4IO9|1|X|G|2392
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L28
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