HL_4IOA_009

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4IOA|1|X|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_68493.3

Basepair signature

cWW-tWH-R-R-R

Number of instances in this motif group

11

Unit IDs

4IOA|1|X|C|316
4IOA|1|X|U|317
4IOA|1|X|G|318
4IOA|1|X|G|319
4IOA|1|X|A|320
4IOA|1|X|A|321
4IOA|1|X|A|322
4IOA|1|X|G|323

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24