4IOA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4IOA_001 | 1/X/58:67 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
HL_4IOA_002 | 1/X/85:95 | No text annotation | homologous HL_7A0S_002 HL_50418.1 | |
HL_4IOA_003 | 1/X/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_4IOA_004 | 1/X/133:138 | GNRA variation | ||
HL_4IOA_005 | 1/X/146:151 | GNRA | ||
HL_4IOA_006 | 1/X/171:178 | No text annotation | geometric HL_7RQB_006 NA | |
HL_4IOA_007 | 1/X/202:207 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
HL_4IOA_008 | 1/X/223:229 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
HL_4IOA_009 | 1/X/316:323 | T-loop with 1 bulged base | ||
HL_4IOA_010 | 1/X/330:334 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
HL_4IOA_011 | 1/X/338:346 | T-loop with unstacked turn | ||
HL_4IOA_012 | 1/X/395:405 | No text annotation | homologous HL_7A0S_013 HL_91503.7 | |
HL_4IOA_013 | 1/X/423:430 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
HL_4IOA_014 | 1/X/473:478 | GNRA | ||
HL_4IOA_015 | 1/X/498:503 | GNRA | ||
HL_4IOA_016 | 1/X/552:560 | Other HL | geometric HL_5J7L_200 HL_08100.1 | |
HL_4IOA_017 | 1/X/575:584 | T-loop with 2 stacked bulged bases | ||
HL_4IOA_018 | 1/X/622:627 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
HL_4IOA_019 | 1/X/640:645 | GNRA | ||
HL_4IOA_020 | 1/X/651:658 | No text annotation | homologous HL_7A0S_021 HL_28075.1 | |
HL_4IOA_021 | 1/X/725:732 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
HL_4IOA_022 | 1/X/757:766 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
HL_4IOA_023 | 1/X/792:798 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
HL_4IOA_024 | 1/X/839:844 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
HL_4IOA_026 | 1/X/966:973 | GNRA | ||
HL_4IOA_027 | 1/X/989:996 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
HL_4IOA_071 | 1/X/1073:1087 | No text annotation | ||
HL_4IOA_028 | 1/X/1075:1085 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
HL_4IOA_072 | 1/X/1098:1113 | No text annotation | homologous HL_5J7L_162 NA | |
HL_4IOA_030 | 1/X/1235:1240 | GNRA | ||
HL_4IOA_031 | 1/X/1294:1302 | T-loop with 2 stacked bulged bases | ||
HL_4IOA_032 | 1/X/1337:1343 | No text annotation | homologous HL_7RQB_034 NA | |
HL_4IOA_033 | 1/X/1376:1381 | GNRA variation | ||
HL_4IOA_034 | 1/X/1402:1411 | No text annotation | homologous HL_7A0S_035 HL_81545.2 | |
HL_4IOA_035 | 1/X/1466:1476 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
HL_4IOA_036 | 1/X/1508:1514 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
HL_4IOA_037 | 1/X/1549:1554 | No text annotation | geometric HL_8C3A_006 NA | |
HL_4IOA_038 | 1/X/1581:1584 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
HL_4IOA_039 | 1/X/1628:1635 | No text annotation | homologous HL_7RQB_040 NA | |
HL_4IOA_040 | 1/X/1647:1652 | No text annotation | homologous HL_7RQB_041 NA | |
HL_4IOA_041 | 1/X/1708:1713 | UNCG | ||
HL_4IOA_042 | 1/X/1731:1735 | No text annotation | homologous HL_7A0S_043 NA | |
HL_4IOA_043 | 1/X/1743:1747 | No text annotation | homologous HL_7RQB_044 NA | |
HL_4IOA_044 | 1/X/1767:1779 | No text annotation | homologous HL_7A0S_045 HL_60266.1 | |
HL_4IOA_045 | 1/X/1797:1803 | GNRA | ||
HL_4IOA_046 | 1/X/1856:1861 | GNRA | ||
HL_4IOA_047 | 1/X/1932:1940 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
HL_4IOA_048 | 1/X/1975:1979 | No text annotation | ||
HL_4IOA_049 | 1/X/2010:2019 | No text annotation | homologous HL_7A0S_049 HL_61996.2 | |
HL_4IOA_073 | 1/X/2186:2199 | No text annotation | ||
HL_4IOA_051 | 1/X/2189:2196 | No text annotation | ||
HL_4IOA_052 | 1/X/2227:2235 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
HL_4IOA_053 | 1/X/2243:2255 | No text annotation | homologous HL_7RQB_054 NA | |
HL_4IOA_076 | 1/X/2283:2291 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
HL_4IOA_055 | 1/X/2303:2310 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
HL_4IOA_056 | 1/X/2334:2341 | GNRA with extra cWW | homologous HL_7A0S_056 HL_04259.3 | |
HL_4IOA_057 | 1/X/2353:2358 | GNRA | ||
HL_4IOA_058 | 1/X/2383:2392 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
HL_4IOA_059 | 1/X/2450:2458 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
HL_4IOA_060 | 1/X/2507:2514 | No text annotation | homologous HL_7A0S_060 HL_31585.4 | |
HL_4IOA_061 | 1/X/2530:2536 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
HL_4IOA_062 | 1/X/2573:2578 | GNRA | ||
HL_4IOA_063 | 1/X/2637:2642 | GNRA | ||
HL_4IOA_064 | 1/X/2680:2685 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
HL_4IOA_065 | 1/X/2725:2739 | No text annotation | homologous HL_7RQB_066 NA | |
HL_4IOA_074 | 1/X/2772:2780 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
HL_4IOA_067 | 1/X/2794:2802 | No text annotation | homologous HL_7A0S_067 HL_64690.6 | |
HL_4IOA_068 | 1/X/2831:2836 | GNRA | ||
HL_4IOA_075 | 1/Y/36:50 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
HL_4IOA_069 | 1/Y/40:46 | No text annotation | geometric HL_7RQB_070 NA | |
HL_4IOA_070 | 1/Y/88:93 | GNRA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4IOA_025 | No text annotation | ||
HL_4IOA_029 | No text annotation | ||
HL_4IOA_050 | No text annotation | ||
HL_4IOA_054 | No text annotation | ||
HL_4IOA_066 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4IOA_001 | 1/X/24:30, 1/X/520:526 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
IL_4IOA_002 | 1/X/36:37, 1/X/454:456 | Single bulged A | ||
IL_4IOA_003 | 1/X/42:43, 1/X/447:449 | Minor groove platform | ||
IL_4IOA_004 | 1/X/80:84, 1/X/96:103 | Kink-turn | ||
IL_4IOA_005 | 1/X/160:161, 1/X/189:191 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
IL_4IOA_006 | 1/X/165:171, 1/X/178:185 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4IOA_007 | 1/X/215:222, 1/X/230:236 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4IOA_008 | 1/X/303:306, 1/X/354:359 | No text annotation | ||
IL_4IOA_009 | 1/X/492:495, 1/X/506:519 | No text annotation | homologous IL_7A0S_009 IL_81516.2 | |
IL_4IOA_010 | 1/X/573:575, 1/X/584:586 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_07785.1 | |
IL_4IOA_011 | 1/X/600:602, 1/X/678:679 | Single bulged A | ||
IL_4IOA_012 | 1/X/616:620, 1/X/629:633 | AAA cross-strand stack | ||
IL_4IOA_013 | 1/X/685:687, 1/X/819:821 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
IL_4IOA_014 | 1/X/687:691, 1/X/812:819 | tHW-tHW cross-strand stack | ||
IL_4IOA_015 | 1/X/710:711, 1/X/776:778 | Single bulged A | ||
IL_4IOA_016 | 1/X/715:716, 1/X/741:743 | Single bulged G | ||
IL_4IOA_017 | 1/X/716:721, 1/X/736:741 | Triple sheared with non-canonical cWW | homologous IL_7A0S_018 IL_06136.2 | |
IL_4IOA_018 | 1/X/751:754, 1/X/769:771 | Major groove platform with extra cWW | geometric IL_7RQB_022 NA | |
IL_4IOA_019 | 1/X/754:756, 1/X/767:769 | Isolated non-canonical cWW pair | homologous IL_7A0S_020 IL_87907.2 | |
IL_4IOA_020 | 1/X/788:790, 1/X/800:804 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.2 | |
IL_4IOA_021 | 1/X/850:851, 1/X/951:953 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
IL_4IOA_022 | 1/X/857:860, 1/X/944:945 | Major groove platform; stack outside cWW | homologous IL_7A0S_023 IL_50694.7 | |
IL_4IOA_110 | 1/X/857:861, 1/X/942:945 | No text annotation | homologous IL_4WF9_029 IL_06300.1 | |
IL_4IOA_023 | 1/X/860:861, 1/X/942:944 | No text annotation | geometric IL_7A0S_024 IL_90729.1 | |
IL_4IOA_024 | 1/X/863:864, 1/X/938:940 | Single bulged C | homologous IL_7A0S_025 IL_61258.15 | |
IL_4IOA_025 | 1/X/864:866, 1/X/936:938 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_87907.2 | |
IL_4IOA_026 | 1/X/871:875, 1/X/927:931 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4IOA_027 | 1/X/875:876, 1/X/925:927 | Minor groove platform | ||
IL_4IOA_028 | 1/X/877:881, 1/X/921:924 | C-loop | ||
IL_4IOA_029 | 1/X/883:885, 1/X/917:919 | Isolated near basepair | homologous IL_7A0S_030 IL_42997.3 | |
IL_4IOA_030 | 1/X/963:965, 1/X/974:976 | Isolated non-canonical cWW pair | ||
IL_4IOA_031 | 1/X/1005:1007, 1/X/1170:1171 | Single bulged C | ||
IL_4IOA_032 | 1/X/1009:1013, 1/X/1164:1168 | UAA/GAN | ||
IL_4IOA_033 | 1/X/1015:1022, 1/X/1161:1162 | SSU/LSU pseudoknot | ||
IL_4IOA_034 | 1/X/1022:1024, 1/X/1160:1161 | Single bulged U | ||
IL_4IOA_035 | 1/X/1029:1035, 1/X/1150:1155 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
IL_4IOA_036 | 1/X/1035:1041, 1/X/1135:1150 | No text annotation | geometric IL_7A0S_037 IL_50715.3 | |
IL_4IOA_037 | 1/X/1042:1045, 1/X/1132:1134 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
IL_4IOA_039 | 1/X/1054:1062, 1/X/1119:1123 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
IL_4IOA_040 | 1/X/1066:1073, 1/X/1087:1115 | No text annotation | ||
IL_4IOA_041 | 1/X/1175:1178, 1/X/1196:1199 | Tandem non-canonical cWW pairs | ||
IL_4IOA_043 | 1/X/1210:1212, 1/X/1260:1263 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
IL_4IOA_044 | 1/X/1218:1220, 1/X/1252:1254 | Isolated non-canonical cWW pair | homologous IL_7A0S_042 IL_87907.2 | |
IL_4IOA_045 | 1/X/1221:1228, 1/X/1247:1251 | Kink-turn | ||
IL_4IOA_046 | 1/X/1232:1234, 1/X/1241:1243 | Intercalated cWW | homologous IL_7A0S_044 IL_31737.3 | |
IL_4IOA_047 | 1/X/1275:1282, 1/X/1994:2000 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4IOA_048 | 1/X/1323:1326, 1/X/1619:1620 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_50694.7 | |
IL_4IOA_049 | 1/X/1332:1336, 1/X/1344:1346 | C-loop | ||
IL_4IOA_050 | 1/X/1364:1368, 1/X/1389:1393 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
IL_4IOA_051 | 1/X/1370:1374, 1/X/1383:1387 | tSH-tHW-tHS | ||
IL_4IOA_052 | 1/X/1426:1430, 1/X/1598:1605 | Kink-turn | homologous IL_7A0S_050 IL_69229.3 | |
IL_4IOA_053 | 1/X/1431:1435, 1/X/1593:1597 | UAA/GAN | ||
IL_4IOA_054 | 1/X/1447:1449, 1/X/1573:1576 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
IL_4IOA_055 | 1/X/1451:1454, 1/X/1567:1571 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
IL_4IOA_056 | 1/X/1463:1465, 1/X/1477:1478 | Single stack bend | homologous IL_7A0S_054 IL_26793.1 | |
IL_4IOA_057 | 1/X/1488:1490, 1/X/1534:1535 | Single bulged C | ||
IL_4IOA_058 | 1/X/1491:1494, 1/X/1530:1533 | Double sheared | ||
IL_4IOA_059 | 1/X/1496:1498, 1/X/1522:1528 | No text annotation | ||
IL_4IOA_061 | 1/X/1503:1507, 1/X/1515:1517 | No text annotation | geometric IL_4V9F_072 IL_55516.2 | |
IL_4IOA_062 | 1/X/1668:1673, 1/X/1987:1989 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
IL_4IOA_113 | 1/X/1680:1682, 1/X/1978:1980 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
IL_4IOA_114 | 1/X/1683:1686, 1/X/1976:1977 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
IL_4IOA_115 | 1/X/1683:1691, 1/X/1973:1977 | No text annotation | geometric IL_7A0S_109 IL_22854.4 | |
IL_4IOA_116 | 1/X/1686:1691, 1/X/1973:1976 | Intercalated tWH | homologous IL_7A0S_062 IL_76758.2 | |
IL_4IOA_063 | 1/X/1703:1708, 1/X/1713:1719 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
IL_4IOA_064 | 1/X/1761:1762, 1/X/1963:1965 | Single bulged A | ||
IL_4IOA_065 | 1/X/1789:1795, 1/X/1805:1813 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
IL_4IOA_066 | 1/X/1829:1832, 1/X/1885:1886 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
IL_4IOA_067 | 1/X/1833:1834, 1/X/1881:1884 | Multiple bulged bases | ||
IL_4IOA_068 | 1/X/1838:1841, 1/X/1876:1877 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_68140.4 | |
IL_4IOA_069 | 1/X/1843:1847, 1/X/1870:1874 | UAA/GAN with extra pair | homologous IL_7A0S_069 IL_89021.2 | |
IL_4IOA_070 | 1/X/1848:1852, 1/X/1865:1869 | Triple sheared | ||
IL_4IOA_071 | 1/X/1916:1917, 1/X/1947:1950 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
IL_4IOA_072 | 1/X/1917:1928, 1/X/1944:1947 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
IL_4IOA_073 | 1/X/2033:2035, 1/X/2596:2597 | Major groove platform | homologous IL_7RQB_078 NA | |
IL_4IOA_074 | 1/X/2037:2040, 1/X/2590:2594 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
IL_4IOA_075 | 1/X/2050:2052, 1/X/2421:2422 | Single bulged U | ||
IL_4IOA_076 | 1/X/2053:2054, 1/X/2417:2420 | Minor groove platform | ||
IL_4IOA_077 | 1/X/2064:2066, 1/X/2215:2218 | Isolated tHS basepair with bulges | ||
IL_4IOA_078 | 1/X/2068:2070, 1/X/2211:2213 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
IL_4IOA_082 | 1/X/2276:2278, 1/X/2296:2300 | Isolated tHS basepair with bulges | ||
IL_4IOA_083 | 1/X/2329:2332, 1/X/2343:2346 | Double sheared | ||
IL_4IOA_084 | 1/X/2380:2382, 1/X/2393:2394 | Major groove platform | ||
IL_4IOA_085 | 1/X/2432:2433, 1/X/2477:2479 | Single stack bend | geometric IL_7RQB_091 NA | |
IL_4IOA_086 | 1/X/2433:2434, 1/X/2475:2477 | Major groove platform | homologous IL_7RQB_092 NA | |
IL_4IOA_087 | 1/X/2436:2438, 1/X/2472:2473 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
IL_4IOA_088 | 1/X/2438:2440, 1/X/2468:2472 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
IL_4IOA_089 | 1/X/2445:2449, 1/X/2459:2463 | Triple sheared | ||
IL_4IOA_090 | 1/X/2486:2487, 1/X/2559:2561 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
IL_4IOA_091 | 1/X/2489:2491, 1/X/2553:2557 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
IL_4IOA_092 | 1/X/2491:2492, 1/X/2550:2553 | Multiple bulged bases | ||
IL_4IOA_093 | 1/X/2501:2502, 1/X/2519:2522 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_02555.1 | |
IL_4IOA_094 | 1/X/2570:2571, 1/X/2580:2582 | Single bulged A | homologous IL_4WF9_098 IL_31462.6 | |
IL_4IOA_095 | 1/X/2615:2619, 1/X/2754:2762 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.3 | |
IL_4IOA_096 | 1/X/2631:2637, 1/X/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge | ||
IL_4IOA_097 | 1/X/2659:2663, 1/X/2705:2707 | C-loop | ||
IL_4IOA_098 | 1/X/2666:2670, 1/X/2698:2702 | No text annotation | homologous IL_7A0S_096 IL_23774.1 | |
IL_4IOA_099 | 1/X/2674:2675, 1/X/2690:2694 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
IL_4IOA_100 | 1/X/2717:2722, 1/X/2742:2747 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_49767.8 | |
IL_4IOA_101 | 1/X/2813:2814, 1/X/2853:2855 | Single bulged G | ||
IL_4IOA_102 | 1/X/2818:2820, 1/X/2846:2849 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
IL_4IOA_103 | 1/X/2822:2827, 1/X/2840:2844 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
IL_4IOA_104 | 1/Y/19:21, 1/Y/66:69 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
IL_4IOA_105 | 1/Y/25:30, 1/Y/58:62 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
IL_4IOA_106 | 1/Y/32:33, 1/Y/53:56 | Minor groove platform | geometric IL_7RQB_073 NA | |
IL_4IOA_117 | 1/Y/36:40, 1/Y/46:50 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
IL_4IOA_108 | 1/Y/73:81, 1/Y/100:108 | Bacterial 5S Loop E | ||
IL_4IOA_109 | 1/Y/82:84, 1/Y/97:99 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_07785.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4IOA_038 | Tandem non-canonical cWW pairs | ||
IL_4IOA_111 | No text annotation | ||
IL_4IOA_042 | Isolated non-canonical cWW pair | ||
IL_4IOA_112 | No text annotation | ||
IL_4IOA_060 | Isolated non-canonical cWW pair | ||
IL_4IOA_079 | Isolated non-canonical cWW pair | ||
IL_4IOA_080 | No text annotation | ||
IL_4IOA_081 | No text annotation | ||
IL_4IOA_107 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4IOA_011 | 1/X/30:31, 1/X/485:492, 1/X/519:520 | No text annotation | geometric J3_7A0S_001 J3_60031.2 | |
J3_4IOA_016 | 1/X/30:31, 1/X/485:495, 1/X/506:520 | No text annotation | homologous J3_7A0S_015 J3_92134.2 | |
J3_4IOA_017 | 1/X/32:35, 1/X/457:472, 1/X/479:484 | No text annotation | homologous J3_7A0S_016 J3_30040.2 | |
J3_4IOA_012 | 1/X/55:56, 1/X/69:75, 1/X/108:112 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
J3_4IOA_001 | 1/X/696:702, 1/X/786:788, 1/X/804:807 | No text annotation | homologous J3_7RQB_004 NA | |
J3_4IOA_002 | 1/X/711:713, 1/X/745:749, 1/X/773:776 | No text annotation | homologous J3_7A0S_005 J3_44724.7 | |
J3_4IOA_018 | 1/X/1066:1073, 1/X/1087:1098, 1/X/1113:1115 | No text annotation | ||
J3_4IOA_003 | 1/X/1311:1316, 1/X/1641:1643, 1/X/1656:1659 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
J3_4IOA_004 | 1/X/1319:1322, 1/X/1621:1627, 1/X/1636:1638 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_4IOA_013 | 1/X/1357:1363, 1/X/1394:1398, 1/X/1415:1416 | No text annotation | homologous J3_7A0S_018 J3_31965.2 | |
J3_4IOA_019 | 1/X/1438:1443, 1/X/1580:1581, 1/X/1584:1590 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
J3_4IOA_006 | 1/X/2074:2076, 1/X/2179:2183, 1/X/2202:2207 | Kink-turn in J3 | ||
J3_4IOA_020 | 1/X/2261:2263, 1/X/2363:2374, 1/X/2400:2406 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
J3_4IOA_007 | 1/X/2274:2276, 1/X/2300:2302, 1/X/2311:2316 | No text annotation | homologous J3_7RQB_011 NA | |
J3_4IOA_008 | 1/X/2496:2499, 1/X/2524:2526, 1/X/2540:2546 | No text annotation | homologous J3_7RQB_012 NA | |
J3_4IOA_009 | 1/X/2769:2771, 1/X/2781:2786, 1/X/2864:2868 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
J3_4IOA_015 | 1/X/2789:2790, 1/X/2806:2811, 1/X/2857:2861 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
J3_4IOA_021 | 1/Y/12:18, 1/Y/70:71, 1/Y/110:113 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
J4_4IOA_001 | 1/X/308:312, 1/X/327:330, 1/X/334:336, 1/X/348:352 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
J4_4IOA_002 | 1/X/611:614, 1/X/635:639, 1/X/646:650, 1/X/659:669 | No text annotation | homologous J4_4WF9_003 J4_60168.1 | |
J4_4IOA_003 | 1/X/1283:1289, 1/X/1307:1308, 1/X/1662:1665, 1/X/1992:1993 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
J4_4IOA_004 | 1/X/1323:1327, 1/X/1351:1356, 1/X/1417:1418, 1/X/1613:1620 | No text annotation | homologous J4_7A0S_005 J4_69051.6 | |
J4_4IOA_005 | 1/X/1326:1327, 1/X/1351:1356, 1/X/1417:1418, 1/X/1613:1619 | No text annotation | homologous J4_7A0S_006 J4_10313.5 | |
J4_4IOA_006 | 1/X/1458:1460, 1/X/1481:1482, 1/X/1541:1545, 1/X/1558:1563 | No text annotation | homologous J4_7A0S_007 J4_91813.1 | |
J4_4IOA_007 | 1/X/1763:1767, 1/X/1779:1783, 1/X/1819:1822, 1/X/1958:1962 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
J4_4IOA_008 | 1/X/2264:2268, 1/X/2322:2326, 1/X/2349:2351, 1/X/2360:2362 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
J4_4IOA_009 | 1/X/2622:2625, 1/X/2653:2655, 1/X/2711:2716, 1/X/2748:2751 | No text annotation | homologous J4_7A0S_010 J4_54165.1 | |
J5_4IOA_001 | 1/X/46:53, 1/X/114:119, 1/X/128:129, 1/X/142:143, 1/X/154:155 | No text annotation | homologous J5_7A0S_001 J5_68783.1 | |
J5_4IOA_002 | 1/X/541:543, 1/X/569:573, 1/X/586:588, 1/X/1274:1275, 1/X/2000:2001 | No text annotation | homologous J5_7A0S_003 J5_43153.5 | |
J5_4IOA_003 | 1/X/593:598, 1/X/681:684, 1/X/822:825, 1/X/1209:1210, 1/X/1263:1269 | No text annotation | homologous J5_7A0S_004 J5_74302.5 | |
J5_4IOA_004 | 1/X/1691:1699, 1/X/1723:1724, 1/X/1742:1743, 1/X/1747:1755, 1/X/1971:1973 | No text annotation | homologous J5_7A0S_005 J5_62523.6 | |
J5_4IOA_005 | 1/X/2040:2047, 1/X/2425:2432, 1/X/2479:2486, 1/X/2561:2567, 1/X/2585:2590 | No text annotation | ||
J5_4IOA_006 | 1/X/2057:2060, 1/X/2222:2225, 1/X/2237:2238, 1/X/2260:2261, 1/X/2406:2414 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
J6_4IOA_001 | 1/X/44:45, 1/X/156:160, 1/X/191:201, 1/X/208:212, 1/X/239:243, 1/X/439:446 | No text annotation | ||
J6_4IOA_002 | 1/X/2057:2060, 1/X/2222:2225, 1/X/2237:2238, 1/X/2260:2263, 1/X/2363:2374, 1/X/2400:2414 | No text annotation | ||
J7_4IOA_001 | 1/X/8:15, 1/X/535:541, 1/X/2001:2006, 1/X/2023:2026, 1/X/2604:2609, 1/X/2768:2769, 1/X/2868:2869 | No text annotation | ||
J7_4IOA_002 | 1/X/830:835, 1/X/848:849, 1/X/954:957, 1/X/982:987, 1/X/998:1002, 1/X/1174:1175, 1/X/1199:1204 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4IOA_005 | No text annotation | ||
J3_4IOA_010 | 5S rRNA |
Coloring options: