HL_4IOA_020

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

4IOA|1|X|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91050.1

Basepair signature

cWW-tSH-R-R-R

Number of instances in this motif group

2

Unit IDs

4IOA|1|X|C|651
4IOA|1|X|C|652
4IOA|1|X|G|653
4IOA|1|X|A|654
4IOA|1|X|A|655
4IOA|1|X|U|656
4IOA|1|X|A|657
4IOA|1|X|G|658

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35