HL_4IOA_025

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IOA_025 not in the Motif Atlas

Homologous match to HL_7A0S_025

Geometric discrepancy: 0.4932

The information below is about HL_7A0S_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IOA|1|X|G|888
4IOA|1|X|C|889
4IOA|1|X|U|890
4IOA|1|X|A|891
4IOA|1|X|A|911
4IOA|1|X|A|912
4IOA|1|X|A|913
4IOA|1|X|C|914

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L25