HL_4IOA_028

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4IOA|1|X|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72543.3

Basepair signature

cWW-tSH-R-R-R-R-R-R

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|C|1075
4IOA|1|X|U|1076
4IOA|1|X|U|1077
4IOA|1|X|A|1078
4IOA|1|X|G|1079
4IOA|1|X|A|1080
4IOA|1|X|A|1081
4IOA|1|X|G|1082
4IOA|1|X|C|1083
4IOA|1|X|A|1084
4IOA|1|X|G|1085

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L11

Chain J

50S ribosomal protein L16