3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33239.13
Basepair signature
cWW-R-R-tWH-R-R-R
Number of instances in this motif group
108

Unit IDs

4IOA|1|X|G|1294
4IOA|1|X|U|1295
4IOA|1|X|G|1296
4IOA|1|X|A|1297
4IOA|1|X|G|1298
4IOA|1|X|A|1299
4IOA|1|X|A|1300
4IOA|1|X|U|1301
4IOA|1|X|C|1302

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L17
Chain P
50S ribosomal protein L22
Chain Z
50S ribosomal protein L32

Coloring options:

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