HL_4IOA_031
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33239.13
- Basepair signature
- cWW-R-R-tWH-R-R-R
- Number of instances in this motif group
- 108
Unit IDs
4IOA|1|X|G|1294
4IOA|1|X|U|1295
4IOA|1|X|G|1296
4IOA|1|X|A|1297
4IOA|1|X|G|1298
4IOA|1|X|A|1299
4IOA|1|X|A|1300
4IOA|1|X|U|1301
4IOA|1|X|C|1302
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L17
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
Coloring options: