3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_43074.13
Basepair signature
cWW-tSH-R-R
Number of instances in this motif group
275

Unit IDs

4IOA|1|X|C|1376
4IOA|1|X|G|1377
4IOA|1|X|A|1378
4IOA|1|X|A|1379
4IOA|1|X|C|1380
4IOA|1|X|G|1381

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain U
50S ribosomal protein L28

Coloring options:

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