HL_4IOA_034

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

4IOA|1|X|U|1409, 4IOA|1|X|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29392.1

Basepair signature

cWW-tWH-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|G|1402
4IOA|1|X|U|1403
4IOA|1|X|C|1404
4IOA|1|X|A|1405
4IOA|1|X|A|1406
4IOA|1|X|G|1407
4IOA|1|X|A|1408
4IOA|1|X|U|1409
4IOA|1|X|U|1410
4IOA|1|X|C|1411

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23