HL_4IOA_035

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

4IOA|1|X|A|1468, 4IOA|1|X|U|1469, 4IOA|1|X|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53119.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|C|1466
4IOA|1|X|U|1467
4IOA|1|X|A|1468
4IOA|1|X|U|1469
4IOA|1|X|G|1470
4IOA|1|X|G|1471
4IOA|1|X|C|1472
4IOA|1|X|U|1473
4IOA|1|X|A|1474
4IOA|1|X|U|1475
4IOA|1|X|G|1476

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17