HL_4IOA_046

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_43074.13

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

275

Unit IDs

4IOA|1|X|U|1856
4IOA|1|X|G|1857
4IOA|1|X|C|1858
4IOA|1|X|A|1859
4IOA|1|X|A|1860
4IOA|1|X|G|1861

Current chains

Chain X

23S ribosomal RNA

Nearby chains