HL_4IOA_055

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46142.6

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

20

Unit IDs

4IOA|1|X|C|2303
4IOA|1|X|G|2304
4IOA|1|X|C|2305
4IOA|1|X|A|2306
4IOA|1|X|A|2307
4IOA|1|X|A|2308
4IOA|1|X|G|2309
4IOA|1|X|G|2310

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain T

50S ribosomal protein L27