HL_4IOA_074

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUUUAUCA

Length

9 nucleotides

Bulged bases

4IOA|1|X|U|2775, 4IOA|1|X|U|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IOA_074 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1584

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4IOA|1|X|U|2772
4IOA|1|X|G|2773
4IOA|1|X|U|2774
4IOA|1|X|U|2775
4IOA|1|X|U|2776
4IOA|1|X|A|2777
4IOA|1|X|U|2778
4IOA|1|X|C|2779
4IOA|1|X|A|2780

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22