HL_4JI0_011

3D structure

PDB id

4JI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4JI0|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI0_011 not in the Motif Atlas

Geometric match to HL_5H9F_001

Geometric discrepancy: 0.3532

The information below is about HL_5H9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4JI0|1|A|C|418
4JI0|1|A|C|419
4JI0|1|A|U|420
4JI0|1|A|U|421
4JI0|1|A|C|422
4JI0|1|A|G|423
4JI0|1|A|G|424
4JI0|1|A|G|425

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain D

ribosomal protein S4