HL_4JI2_020

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI2_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.0988

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4JI2|1|A|C|897
4JI2|1|A|G|898
4JI2|1|A|C|899
4JI2|1|A|A|900
4JI2|1|A|A|901
4JI2|1|A|G|902

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN S17