HL_4JI3_033

3D structure

PDB id

4JI3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI3_033 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.2368

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4JI3|1|A|G|157
4JI3|1|A|G|158
4JI3|1|A|G|159
4JI3|1|A|A|160
4JI3|1|A|A|161
4JI3|1|A|A|162
4JI3|1|A|C|163
4JI3|1|A|U|164

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20