HL_4JI4_011

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4JI4|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI4_011 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3881

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4JI4|1|A|C|418
4JI4|1|A|C|419
4JI4|1|A|U|420
4JI4|1|A|U|421
4JI4|1|A|C|422
4JI4|1|A|G|423
4JI4|1|A|G|424
4JI4|1|A|G|425

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain D

RIBOSOMAL PROTEIN S4