HL_4K0K_006

3D structure

PDB id

4K0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4K0K|1|A|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4K0K_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0617

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4K0K|1|A|G|255
4K0K|1|A|G|256
4K0K|1|A|U|257
4K0K|1|A|A|258
4K0K|1|A|A|259
4K0K|1|A|U|260
4K0K|1|A|G|261
4K0K|1|A|G|262
4K0K|1|A|C|263

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20