HL_4KJI_001

3D structure

PDB id

4KJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Novel re-arrangement of an RsmA/cSRa family protein to create a structurally distinct new RNA-binding family member

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGGAUC

Length

8 nucleotides

Bulged bases

4KJI|1|C|A|7, 4KJI|1|C|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4KJI|1|C|G|5
4KJI|1|C|A|6
4KJI|1|C|A|7
4KJI|1|C|G|8
4KJI|1|C|G|9
4KJI|1|C|A|10
4KJI|1|C|U|11
4KJI|1|C|C|12

Current chains

Chain C

RsmZ-2

Nearby chains

Chain A

RsmN, a RNA-binding protein of Regulator of Secondary Metabolism

Chain B

RsmN, a RNA-binding protein of Regulator of Secondary Metabolism