3D structure

PDB id
4KVB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17
Experimental method
X-RAY DIFFRACTION
Resolution
4.2 Å

Loop

Sequence
UGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4KVB_007 not in the Motif Atlas
Homologous match to HL_5J7L_007
Geometric discrepancy: 0.0991
The information below is about HL_5J7L_007
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4KVB|1|A|U|296
4KVB|1|A|G|297
4KVB|1|A|A|298
4KVB|1|A|G|299
4KVB|1|A|A|300
4KVB|1|A|G|301

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain E
30S ribosomal protein S5
Chain L
30S ribosomal protein S12

Coloring options:


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