3D structure

PDB id
4KZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an RNA aptamer in complex with fluorophore and Fab
Experimental method
X-RAY DIFFRACTION
Resolution
2.19 Å

Loop

Sequence
GAAACAC
Length
7 nucleotides
Bulged bases
4KZD|1|R|A|38, 4KZD|1|R|A|40
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22584.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
22

Unit IDs

4KZD|1|R|G|37
4KZD|1|R|A|38
4KZD|1|R|A|39
4KZD|1|R|A|40
4KZD|1|R|C|41
4KZD|1|R|A|42
4KZD|1|R|C|43

Current chains

Chain R
RNA (84-MER)

Nearby chains

Chain H
BL3-6 Fab antibody, heavy chain
Chain L
BL3-6 Fab antibody, light chain

Coloring options:

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