HL_64036.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	1-5	2-3	2-4
1	HL_3IGI_009	3IGI	0.6083	1	Other HL	A	Group IIC intron	C	368	G	369	A	371	C	372	G	373	cWW		tSW
2	HL_9DFE_063	9DFE	0.7473	1	Other HL	1A	LSU rRNA	C	2701	U	2702	C	2704	A	2705	G	2706	cWW	cSH
3	HL_6OL3_001	6OL3	0.5882	2	Other HL	C	VA RNA	G	64	A	66	C	68	C	69	C	70	cWW	ntSW
4	HL_8DP3_001	8DP3	0.1186	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	20	A	22	C	24	A	25	C	26	cWW		tSW
5	HL_8VMA_003	8VMA	0.1577	2	Fab BL3-6 binding hairpin with tSW	C	Enterovirus 5' cloverleaf cis-acting replication element	G	60	A	62	C	64	A	65	C	66	cWW		tSW
6	HL_7MLX_002	7MLX	0.1266	2	Fab BL3-6 binding hairpin with tSW	R	RNA (65-MER)	G	40	A	42	C	44	A	45	C	46	cWW		tSW
7	HL_8D29_001	8D29	0.0863	2	Fab BL3-6 binding hairpin with tSW	C	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
8	HL_6X5M_002	6X5M	0.1047	2	Fab BL3-6 binding hairpin with tSW	r	ggPAN RNA (39-MER)	G	14	A	16	C	18	A	19	C	20	cWW		tSW
9	HL_8UIW_001	8UIW	0.1219	2	Fab BL3-6 binding hairpin with tSW	N	azaaromatic riboswitch aptamer (yjdF RNA)	G	29	A	31	C	33	A	34	C	35	cWW		tSW
10	HL_7SZU_001	7SZU	0.1350	2	Fab BL3-6 binding hairpin with tSW	R	RNA aptamer	G	35	A	37	C	39	A	40	C	41	cWW		tSW
11	HL_6DB8_002	6DB8	0.0922	2		R	RNA (60-MER)	G	23	A	25	C	27	A	28	C	29	cWW		tSW
12	HL_9C75_002	9C75	0.1191	2	Fab BL3-6 binding hairpin with tSW	R	Rev Response Element	G	49	A	51	C	53	A	54	C	55	cWW		tSW
13	HL_8VMB_001	8VMB	0.1216	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	18	A	20	C	22	A	23	C	24	cWW		ntSW
14	HL_8T29_001	8T29	0.1247	2	Fab BL3-6 binding hairpin with tSW	R	RNA (90-MER)	G	35	A	37	C	39	A	40	C	41	cWW		tSW
15	HL_9C2K_004	9C2K	0.1090	2	Fab BL3-6 binding hairpin with tSW	R	Rev Response Element	G	49	A	51	C	53	A	54	C	55	cWW		tSW
16	HL_9C2K_002	9C2K	0.1115	2	Fab BL3-6 binding hairpin with tSW	C	Rev Response Element	G	49	A	51	C	53	A	54	C	55	cWW		tSW
17	HL_9E7E_002	9E7E	0.0993	2	Fab BL3-6 binding hairpin with tSW	C	Rev Response Element SLII A31C/G39C	G	49	A	51	C	53	A	54	C	55	cWW		tSW
18	HL_8VM9_006	8VM9	0.0578	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	57	A	59	C	61	A	62	C	63	cWW		tSW
19	HL_8D29_003	8D29	0.0000	2	Fab BL3-6 binding hairpin with tSW	J	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
20	HL_8D29_002	8D29	0.0378	2	Fab BL3-6 binding hairpin with tSW	F	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
21	HL_4KZD_001	4KZD	0.0554	2	Fab BL3-6 binding hairpin with tSW	R	RNA (84-MER)	G	37	A	39	C	41	A	42	C	43	cWW		tSW
22	HL_8VM8_003	8VM8	0.0543	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	63	A	65	C	67	A	68	C	69	cWW		tSW
23	HL_9AUS_002	9AUS	0.0791	2	Fab BL3-6 binding hairpin with tSW	R	Loop-closed dumbbell RNA bridged by glycine	G	5	A	7	C	9	A	10	C	11	cWW		tSW
24	HL_8DK7_001	8DK7	0.0756	2	Fab BL3-6 binding hairpin with tSW	C	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
25	HL_9DN4_002	9DN4	0.0828	2	Fab BL3-6 binding hairpin with tSW	F	RNA (20-mer)	G	8	A	10	C	12	A	13	C	14	cWW		tSW
26	HL_3IVK_003	3IVK	0.0895	2	Fab BL3-6 binding hairpin with tSW	M	class I ligase product	G	59	A	61	C	63	A	64	C	65	cWW		tSW
27	HL_9E6Q_043	9E6Q	0.1991	2		1	LSU rRNA	G	1866	A	1868	A	1870	C	1871	C	1872	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAC	23
CGAACG	1
CUCCAG	1
GAACCCC	1
GUAUACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACA	23
GAAC	1
UCCA	1
AACCC	1
UAUAC	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_64036.2 Version HL_64036.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_64036.2 Version HL_64036.2 of this group appears in releases 4.1 to 4.1

Download

Csv

Json