RNA 3D Hub //

Motif HL_64036.2 Version HL_64036.2 of this group appears in releases 4.1 to 4.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 51-52-32-4
1 HL_9E6Q_0439E6Q0.199121 LSU rRNAG1866A1868A1870C1871C1872cWW
2 HL_3IVK_0033IVK0.08952Fab BL3-6 binding hairpin with tSWMclass I ligase productG59A61C63A64C65cWWtSW
3 HL_9DN4_0029DN40.08282Fab BL3-6 binding hairpin with tSWFRNA (20-mer)G8A10C12A13C14cWWtSW
4 HL_8DK7_0018DK70.07562Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
5 HL_9AUS_0029AUS0.07912Fab BL3-6 binding hairpin with tSWRLoop-closed dumbbell RNA bridged by glycineG5A7C9A10C11cWWtSW
6 HL_8VM8_0038VM80.05432Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG63A65C67A68C69cWWtSW
7 HL_4KZD_0014KZD0.05542Fab BL3-6 binding hairpin with tSWRRNA (84-MER)G37A39C41A42C43cWWtSW
8 HL_8D29_0028D290.03782Fab BL3-6 binding hairpin with tSWFRNA (34-MER)G13A15C17A18C19cWWtSW
9 HL_8D29_0038D290.00002Fab BL3-6 binding hairpin with tSWJRNA (34-MER)G13A15C17A18C19cWWtSW
10 HL_8VM9_0068VM90.05782Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG57A59C61A62C63cWWtSW
11 HL_9E7E_0029E7E0.09932Fab BL3-6 binding hairpin with tSWCRev Response Element SLII A31C/G39CG49A51C53A54C55cWWtSW
12 HL_9C2K_0029C2K0.11152Fab BL3-6 binding hairpin with tSWCRev Response ElementG49A51C53A54C55cWWtSW
13 HL_9C2K_0049C2K0.10902Fab BL3-6 binding hairpin with tSWRRev Response ElementG49A51C53A54C55cWWtSW
14 HL_8DP3_0018DP30.11862Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG20A22C24A25C26cWWtSW
15 HL_8VMA_0038VMA0.15772Fab BL3-6 binding hairpin with tSWCEnterovirus 5' cloverleaf cis-acting replication elementG60A62C64A65C66cWWtSW
16 HL_8UIW_0018UIW0.12192Fab BL3-6 binding hairpin with tSWNazaaromatic riboswitch aptamer (yjdF RNA)G29A31C33A34C35cWWtSW
17 HL_7SZU_0017SZU0.13502Fab BL3-6 binding hairpin with tSWRRNA aptamerG35A37C39A40C41cWWtSW
18 HL_7MLX_0027MLX0.12662Fab BL3-6 binding hairpin with tSWRRNA (65-MER)G40A42C44A45C46cWWtSW
19 HL_8D29_0018D290.08632Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
20 HL_6X5M_0026X5M0.10472Fab BL3-6 binding hairpin with tSWrggPAN RNA (39-MER)G14A16C18A19C20cWWtSW
21 HL_6DB8_0026DB80.09222RRNA (60-MER)G23A25C27A28C29cWWtSW
22 HL_9C75_0029C750.11912Fab BL3-6 binding hairpin with tSWRRev Response ElementG49A51C53A54C55cWWtSW
23 HL_8VMB_0018VMB0.12162Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG18A20C22A23C24cWWntSW
24 HL_8T29_0018T290.12472Fab BL3-6 binding hairpin with tSWRRNA (90-MER)G35A37C39A40C41cWWtSW
25 HL_6OL3_0016OL30.58822Other HLC VA RNAG64A66C68C69C70cWWntSW
26 HL_9DFE_0639DFE0.74731Other HL1A LSU rRNAC2701U2702C2704A2705G2706cWWcSH
27 HL_3IGI_0093IGI0.60831Other HLAGroup II catalytic intron D1-D4-3C368G369A371C372G373cWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC23
GUAUACC1
GAACCCC1
CUCCAG1
CGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA23
UAUAC1
AACCC1
UCCA1
GAAC1

Release history

Release4.14.24.34.44.54.6
Date2025-09-102025-10-082025-11-052025-12-032025-12-312026-01-28
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (22)
  • Other HL (3)
  • (2)
    • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.03 | Avg 0.23 | Max 0.82
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