3D structure

PDB id
4KZX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 40S ribosomal subunit in complex with eIF1.
Experimental method
X-RAY DIFFRACTION
Resolution
7.81 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4KZX_020 not in the Motif Atlas
Homologous match to HL_4V88_206
Geometric discrepancy: 0.226
The information below is about HL_4V88_206
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

4KZX|1|i|A|953
4KZX|1|i|G|954
4KZX|1|i|G|955
4KZX|1|i|U|956
4KZX|1|i|G|957
4KZX|1|i|A|958
4KZX|1|i|A|959
4KZX|1|i|A|960
4KZX|1|i|U|961
4KZX|1|i|U|962

Current chains

Chain i
18S ribosomal RNA

Nearby chains

Chain F
40S ribosomal protein S5
Chain O
40S ribosomal protein S14

Coloring options:


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