HL_4KZX_020

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZX_020 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.226

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4KZX|1|i|A|953
4KZX|1|i|G|954
4KZX|1|i|G|955
4KZX|1|i|U|956
4KZX|1|i|G|957
4KZX|1|i|A|958
4KZX|1|i|A|959
4KZX|1|i|A|960
4KZX|1|i|U|961
4KZX|1|i|U|962

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain O

40S ribosomal protein S14