HL_4KZZ_008

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

4KZZ|1|i|G|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_008 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.372

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4KZZ|1|i|G|367
4KZZ|1|i|U|368
4KZZ|1|i|C|369
4KZZ|1|i|G|370
4KZZ|1|i|C|371
4KZZ|1|i|C|372
4KZZ|1|i|G|373
4KZZ|1|i|U|374
4KZZ|1|i|G|375
4KZZ|1|i|C|376
4KZZ|1|i|C|377

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain I

40S Ribosomal Protein S8

Chain L

40S Ribosomal Protein S11